miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|268781594|gb|DN194407.1|DN194407 TGACAATTTTGGATGAGCTTCTGCCTATCTCCATTGAGATGGCGAAACGGGACTGCAGAGGAATATGGAACTTCACCAAC
CCTGGTGTCGTTAGCCACAATGAGATTCTAGAGATGTACAAGAAATACATCAATCCTGATTTCAAGTGGACCAACTTCAC
ACTCGAAGAGCAGGCCAAGGTCATAGTCGCACCTAGAAGCAACAACGAGATGGACGCGTCGAAATTGAAGGCTGAGTTCC
CTCAGCTGCTGTCCATCAAGGACTCTTTGATCAAGTATGTCTTTGAGCCAAACAGGAAGGTTCCTGTTAATTGAGGATTT
AGGTCACGGGGATGTGGAGGTTATTTGTATTGGTTGTTATTGGACACTAAATTAGCTAATGTTGCATGGTGGTCCGTACT
AGTTGTGTTCGATTCTTTTGGGACAATAGCAAGCATACCTTTTTCTCGTCGTTGTTATATACTCCTCTGTCCCTTAACAT
GTGTCTGTAGAAAACCATGTTTCCCTCACAAACACGCTTCTCGGGCGACACTTAAAAGGGGCGACACTTAAAAGGGACGG
AGGGAGTACGCAACCTGTTTGTACAAACAGGTACATATTTAGATGTTCTATATAGTGGCTGATATGCCGAGACACTGTTA
TCGATGAACACTACGAAT




Most similar to sp|Q9LH76|RHM3_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LH76|RHM3_ARATH Probable rhamnose biosynthetic enzyme 3
           OS=Arabidopsis thaliana GN=RHM3 PE=1 SV=1
          Length = 664

 Score =  179 bits (455), Expect = 1e-44
 Identities = 85/99 (85%), Positives = 92/99 (92%)
 Frame = +3

Query: 3   TILDELLPISIEMAKRDCRGIWNFTNPGVVSHNEILEMYKKYINPDFKWTNFTLEEQAKV 182
           TILDELLPISIEMAKR+ RGIWNFTNPGVVSHNEILEMYK YI PDFKW+NF LEEQAKV
Sbjct: 565 TILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKSYIEPDFKWSNFNLEEQAKV 624

Query: 183 IVAPRSNNEMDASKLKAEFPQLLSIKDSLIKYVFEPNRK 299
           IVAPRSNNEMD +KL  EFP++LSIKDSLIKYVFEPN++
Sbjct: 625 IVAPRSNNEMDGAKLSKEFPEMLSIKDSLIKYVFEPNKR 663